Author

Masataka Takahashi

RIKEN Center for Integrative Medical Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1

Frequent Co-Authors

Kazuhide WatanabeiD· 2 shared Akira HasegawaiD· 1 shared Andrew R. WillemsiD· 1 shared Harukazu SuzukiiD· 1 shared Imad AbugessaisaiD· 1 shared Juha KereiD· 1 shared Mélissa CardoniD· 1 shared Nicholas L. PanchyiD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersGenomics

Kazuhide WatanabeORCID

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2 papers

Recent·Most cited

Comparative single-cell transcriptomes of dose and time dependent epithelial-mesenchymal spectrums

Nicholas L. Panchy, Kazuhide Watanabe, Masataka Takahashi, Andrew R. Willems, Tian Hong

The paper compares dose- and time-dependent EMT transcriptomes to show stable intermediate states and improved gene detection in dose-dependent experiments.

NAR Genomics and Bioinformatics · Jul 9, 2022Peer-reviewedGenomics

Quality assessment of single-cell RNA sequencing data by coverage skewness analysis

Imad Abugessaisa, Shuhei Noguchi, Mélissa Cardon, Akira Hasegawa, Kazuhide Watanabe, Masataka Takahashi, Harukazu Suzuki, Shintaro Katayama, Juha Kere, Takeya Kasukawa

The paper introduces SkewC, a method to identify poor quality cells in scRNA-seq by analyzing gene coverage skewness, and validates it across 37,993 cells from 15 protocols.

bioRxiv · Dec 31, 2019 · PreprintGenomics