Author

Mechiel Nieuwoudt

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Assay:metagenomics· 1 Research Focus:protein structure prediction· 1 Assay:proteomics· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

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Alberto SantosiD· 1 shared Divanisha PateliD· 1 shared Isaac H.J. HoungueiD· 1 shared Jemma DanieliD· 1 shared Jeroen Van GoeyiD· 1 shared Kevin EloffiD· 1 shared Konstantinos KalogeropoulosiD· 1 shared Marco ReverennaiD· 1 shared

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2026-2026 · peak 1/yr

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1 shared paperBioinformatics

Alberto SantosORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintSep 8, 2026

Learning from tandem mass spectra at scale with a self-supervised foundation model for proteomics

Mechiel Nieuwoudt, Marco Reverenna, Divanisha Patel…·Konstantinos Kalogeropoulos

This paper introduces InstaNovo-FM, a self-supervised foundation model for proteomics that learns from tandem mass spectra to enable transferable applications across datasets and instruments.

DOI 10.64898/2026.09.03.747733

metagenomicsproteomics

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