Michael B Eisen

Stable host gene expression in the gut of adult Drosophila melanogaster with different bacterial mono-associations

The paper examines how different bacterial associations in Drosophila melanogaster affect host gene expression, finding stable gut profiles but distinct whole-body profiles in conventionally reared flies.

Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster

The paper measures spatial gene expression in Drosophila mutants to understand patterning gene regulation.

Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus

The paper characterizes the transcriptome and selection pressures in the desert mouse Peromyscus eremicus, identifying genes under purifying and balancing selection related to osmoregulation.

Validation of methods for Low-volume RNA-seq

This study evaluates low-volume RNA-seq protocols, finding they perform slightly worse than standard protocols but require less sample, with a cost-reduction modification.

Drosophila embryogenesis scales uniformly across temperature and developmentally diverse species

The paper tracks embryogenesis in Drosophila species across temperatures, finding that while total development time varies, the relative timing of developmental events remains constant.