Author

Mikhail Pachkov

SIB Swiss Institute of Bioinformatics

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1

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Erik van NimwegeniD· 1 shared Nicholas W. Kelley· 1 shared Phil Arnold· 1 shared Saeed OmidiiD· 1 shared Severin BergeriD· 1 shared Silvia SalatinoiD· 1 shared

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2019-2019 · peak 1/yr

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Erik van NimwegenORCID

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1 paper

Recent·Most cited

Crunch: Integrated processing and modeling of ChIP-seq data in terms of regulatory motifs

Severin Berger, Saeed Omidi, Mikhail Pachkov, Phil Arnold, Nicholas W. Kelley, Silvia Salatino, Erik van Nimwegen

Crunch automates ChIP-seq analysis and identifies regulatory motifs, finding that TFs either use single motifs or multiple co-occurring motifs in binding peaks.

Genome Research · Jul 1, 2019Peer-reviewedBioinformatics