Author

Mohamed Keshk

J. Craig Venter Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1

Frequent Co-Authors

Boudewijn P. F. LelieveldtiD· 2 shared Brian D. AevermanniD· 2 shared Ed S. LeiniD· 2 shared Jeremy A. MilleriD· 2 shared Rebecca D. HodgeiD· 2 shared Richard H. ScheuermanniD· 2 shared Trygve E. BakkeniD· 2 shared Aaron G OldreiD· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Boudewijn P. F. LelieveldtORCID

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2 papers

Recent·Most cited

NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing

Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, Boudewijn P. F. Lelieveldt, Ed S. Lein, Richard H. Scheuermann

NS-Forest identifies minimal marker gene combinations for cell type determination from scRNA-seq data, revealing key roles of signaling and non-coding RNAs in neuronal identity.

Genome Research · Oct 1, 2021Peer-reviewedBioinformatics

Conserved cell types with divergent features between human and mouse cortex

Rebecca D. Hodge, Trygve E. Bakken, Jeremy A. Miller, Kimberly A. Smith, Eliza R. Barkan, Lucas T. Graybuck, Jennie Close, Brian Long, Nelson Johansen, Osnat Penn, Zizhen Yao, Jeroen Eggermont, Thomas Höllt, Boaz P. Levi, Soraya I. Shehata, , Ed S. Lein

The paper compares cell types in human and mouse cortex using single nucleus RNA-sequencing, finding conserved architecture with species-specific differences.

Nature · Aug 21, 2019Peer-reviewedNeuroscience