Author

Muhiuddin Faruquee

International Rice Research Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Research Focus:variant calling· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:fine-mapping· 1 Approach:genetic perturbation / CRISPR· 1

Frequent Co-Authors

Ajay KohliiD· 1 shared Anirban Nath· 1 shared Anisar Rahman· 1 shared Anumalla MahenderiD· 1 shared Apurva KhannaiD· 1 shared Bidhan RoyiD· 1 shared C. Xinhong WangiD· 1 shared Challa Venkateshwarlu· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperPlant Biology

Ajay KohliORCID

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2 papers

Recent·Most cited

Prime-InDel version 1: A web tool providing InDel markers for targeted regions narrowing

Yuanbao Lei, Kyaw Myo Thu, Ziqi Zhou, Linyun Xu, C. Xinhong Wang, Tongyao Liu, Lei Meng, Dechen Yang, Muhiuddin Faruquee, Dapu Liu, Yuan Zhao, Xinyu Zhao, Haizhu Chen, Zhikang Li, Wensheng Wang, , Tianqing Zheng

Prime-InDel provides PCR-based InDel markers for fine-mapping in rice, narrowing QTL intervals effectively.

bioRxiv · Jan 30, 2026 · PreprintPlant Biology

Future flooding tolerant rice germplasm: resilience afforded beyond Sub1A gene

Anumalla Mahender, Apurva Khanna, Margaret Catolos, Joie M. Ramos, Ma Teresa Sta. Cruz, Challa Venkateshwarlu, Jaswanth Konijerla, Sharat Kumar Pradhan, Sushanta Kumar Dash, Yater Das, Dhiren Chowdhury, Sanjay Kumar Chetia, Janardan Das, Phuleswar Nath, Girija Rani M, , Waseem Hussain

This paper identifies flood-tolerant rice genotypes with improved submergence and stagnant flooding tolerance, surpassing SUB1A gene-based tolerance, and introduces a new breeding strategy called TTE to enhance genetic gain in flood-prone environments.

The Plant Genome · May 8, 2025Peer-reviewedPlant Biology