Author

N. Shahidi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Research Focus:software / tool· 2 Approach:experimental assay· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

D. P. Nickerson· 3 shared K. Tran· 3 shared M. Pan· 3 shared E. Crampin· 2 shared E. J. Crampin· 1 shared S. Safaei· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 13 mutual co-author links

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3 shared papersBioengineering

D. P. Nickerson

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3 papers

Recent·Most cited

SBML to bond graphs: from conversion to composition

N. Shahidi, M. Pan, K. Tran, E. Crampin, D. P. Nickerson

The paper presents a framework to convert SBML models into bond graphs to ensure physical plausibility and thermodynamic consistency in biochemical models.

bioRxiv · May 25, 2022Bioengineering

A semantics, energy-based approach to automate biomodel composition

N. Shahidi, M. Pan, K. Tran, E. Crampin, D. P. Nickerson

The paper proposes an automated method to compose biosimulation models using semantic annotations and bond graphs, demonstrating it by integrating Ras-MAPK and EGFR models.

bioRxiv · Nov 12, 2021Bioengineering

Hierarchical semantic composition of biosimulation models using bond graphs

N. Shahidi, M. Pan, S. Safaei, K. Tran, E. J. Crampin, D. P. Nickerson

This paper introduces a method to compose biosimulation models using bond graphs and semantic annotations, demonstrating it on a human arterial circulation model to improve modularity and physical consistency.

bioRxiv · Mar 9, 2021Bioengineering