Accelerating Maximal-Exact-Match Seeding with Enumerated Radix Trees
Arun Karthi Subramaniyan, Jack Wadden, Kush Goliya, Nathan Ozog, Xiao Long Wu, Satish Narayanasamy, David T. Blaauw, Reetuparna Das
The paper introduces an optimized data structure for read alignment, improving performance while maintaining accuracy.
bioRxiv · Mar 23, 2020 · PreprintBioinformatics