Author

Arun Karthi Subramaniyan

Microsoft (United States)ORCID 0000-0001-6119-3182Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:human· 1

Frequent Co-Authors

David A. PattersoniD· 1 shared David T. BlaauwiD· 1 shared Jack WaddeniD· 1 shared Kush Goliya· 1 shared Matei ZahariaiD· 1 shared Nathan Ozog· 1 shared Ravi PandyaiD· 1 shared Reetuparna DasiD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

David A. PattersonORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 23, 2021

Fuzzy set intersection based paired-end short-read alignment

William J. Bolosky, Arun Karthi Subramaniyan, Matei Zaharia…·David A. Patterson

This paper introduces a new paired-end short-read alignment algorithm that uses fuzzy set intersection, achieving faster speed with comparable variant call concordance to existing methods.

14 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 23, 2020

Accelerating Maximal-Exact-Match Seeding with Enumerated Radix Trees

Arun Karthi Subramaniyan, Jack Wadden, Kush Goliya…·Reetuparna Das

The paper introduces an optimized data structure for read alignment, improving performance while maintaining accuracy.

5 citations

humanwhole-genome sequencing

𝕏 PostBluesky