Author

Nathan Pereira

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:dimensionality reduction· 1 Research Focus:imputation· 1 Approach:optimal transport· 1 Assay:spatial transcriptomics· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Adrienne Ann BoireiD· 1 shared Anna‐Katerina HadjantonakisiD· 1 shared Catherine Snopkowski· 1 shared Dana Pe’eriD· 1 shared Doron Haviv· 1 shared Ján RemšíkiD· 1 shared John Bashkin· 1 shared Meril T. TakizawaiD· 1 shared

Activity by Year

2024-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Adrienne Ann BoireORCID

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1 paper

Recent·Most cited

The covariance environment defines cellular niches for spatial inference

Doron Haviv, Ján Remšík, Mohamed I. Gatie, Catherine Snopkowski, Meril T. Takizawa, Nathan Pereira, John Bashkin, Stevan B. Jovanovich, Tal Nawy, Ronan Chaligné, Adrienne Ann Boire, Anna‐Katerina Hadjantonakis, Dana Pe’er

This paper introduces COVET and ENVI to model spatial niches and improve gene expression imputation and spatial context inference from single-cell data.

Nature Biotechnology · Apr 2, 2024Peer-reviewedBioinformatics