The covariance environment defines cellular niches for spatial inference
Doron Haviv, Ján Remšík, Mohamed I. Gatie, Catherine Snopkowski, Meril T. Takizawa, Nathan Pereira, John Bashkin, Stevan B. Jovanovich, Tal Nawy, Ronan Chaligné, Adrienne Ann Boire, Anna‐Katerina Hadjantonakis, Dana Pe’er
This paper introduces COVET and ENVI to model spatial niches and improve gene expression imputation and spatial context inference from single-cell data.
Nature Biotechnology · Apr 2, 2024Peer-reviewedBioinformatics