Author

P. A. Hohenlohe

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Biology Disciplines

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Evolutionary Biology· 9

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Approach:statistical model· 7 Research Focus:chromatin & epigenetic regulation· 3 Assay:DNA methylation· 3 Approach:experimental assay· 2 Organism:multiple species· 2 Organism:non-human primate· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

A. R. Stahlke· 4 shared A. Veillet· 3 shared A. D. Yoder· 2 shared A. K. Fraik· 2 shared A. Storfer· 2 shared B. Epstein· 2 shared B. Schonfeld· 2 shared D. D'Agostino· 2 shared

Activity by Year

2019-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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4 shared papersEvolutionary Biology

A. R. Stahlke

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9 papers

Recent·Most cited

Approximate Bayesian computational methods to estimate the strength of divergent selection in population genomics models

M. Lukaszewicz, O. Issaka Salia, P. A. Hohenlohe, E. O. Buzbas

This study evaluates ABC methods for estimating divergent selection parameters using simulations and assesses summary statistics for their effectiveness.

bioRxiv · Jun 6, 2023Evolutionary Biology

Adaptation at the edge: Patterns of local adaptation and genetic variation during a contemporary range expansion

E. I. Clark, D. W. Bean, E. V. Bitume, A. R. Stahlke, P. A. Hohenlohe, R. A. Hufbauer

The paper examines how genetic variation and adaptation differ between core and expanding edge populations during a range expansion, finding that core populations are better adapted to local environments than edge populations.

bioRxiv · May 27, 2023Evolutionary Biology

On the origins of phenotypic parallelism in benthic and limnetic stickleback

L. L. Dean, I. S. Magalhaes, D. D'Agostino, P. A. Hohenlohe, A. D. MacColl

The paper investigates whether benthic and limnetic stickleback phenotypes evolved independently or from a single origin, finding evidence for ancestral trait retention and local adaptation.

bioRxiv · Oct 2, 2022Evolutionary Biology

Hybridization and range expansion in tamarisk beetles (Diorhabda spp.) introduced to North America for classical biological control

A. R. Stahlke, E. V. Bitume, A. Z. Ozsoy, D. W. Bean, A. Veillet, M. I. Clark, E. I. Clark, P. Moran, R. A. Hufbauer, P. A. Hohenlohe

This study examines the genomic consequences of hybridization and range expansion in tamarisk beetles introduced to North America for biocontrol, finding increased genetic diversity in hybridized populations.

bioRxiv · May 18, 2021Evolutionary Biology

Contemporary and historical selection in Tasmanian devils (Sarcophilus harrisii) support novel, polygenic response to transmissible cancer

A. R. Stahlke, B. Epstein, S. Barbosa, M. J. Margres, A. Patton, S. A. Hendricks, A. Veillet, A. K. Fraik, B. Schonfeld, H. McCallum, R. Hamede, M. E. Jones, A. Storfer, P. A. Hohenlohe

This study identifies contemporary and historical selection in Tasmanian devils in response to transmissible cancer, finding limited overlap between genes under recent and ancient selection.

bioRxiv · Aug 7, 2020 · PreprintEvolutionary Biology

Cryptic patterns of speciation in cryptic primates: microendemic mouse lemurs and the multispecies coalescent

J. Poelstra, J. Salmona, G. P. Tiley, D. Schussler, M. B. Blanco, J. B. Andriambeloson, S. Manzi, C. R. Campbell, O. Bouchez, P. D. Etter, A. Iribar, P. A. Hohenlohe, K. E. Hunnicutt, E. A. Johnson, P. M. Kappeler, , A. D. Yoder

The paper investigates species boundaries in mouse lemurs using multispecies coalescent methods, finding that some previously recognized species are not distinct while an undescribed lineage is supported as a new species.

bioRxiv · Jun 2, 2020Evolutionary Biology

Population genomic structure in Goodman's mouse lemur reveals long-standing separation of Madagascar's Central Highlands and eastern rainforests

G. P. Tiley, M. B. Blanco, J. M. Ralison, R. M. Rasoloarison, A. R. Stalhke, P. A. Hohenlohe, A. D. Yoder

The paper uses RADseq data and coalescent methods to analyze population genomic structure in Goodman's mouse lemur, revealing historical separation between Madagascar's Central Highlands and eastern rainforests.

bioRxiv · Jan 30, 2020Evolutionary Biology

Intercontinental genomic parallelism in multiple adaptive radiations

I. S. Magalhaes, J. R. Whiting, D. D'Agostino, P. A. Hohenlohe, M. Mahmud, M. A. Bell, S. Skulason, A. D. C. MacColl

The paper quantifies genomic parallelism across four adaptive radiations of sticklebacks, showing environmental and genetic factors influence parallel evolution.

bioRxiv · Nov 29, 2019Evolutionary Biology

Disease swamps molecular signatures of genetic-environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations

A. K. Fraik, M. J. Margres, B. Epstein, S. Barbosa, M. Jones, S. Hendricks, B. Schonfeld, A. Stahlke, A. Veillet, R. Hamede, H. McCallum, E. Lopez-Contreras, S. J. Kallinen, P. A. Hohenlohe, J. L. Kelley, A. Storfer

The paper examines how disease impacts genetic-environmental associations in Tasmanian devils, finding that disease swamps abiotic environmental signals.

bioRxiv · Sep 24, 2019Evolutionary Biology