Author

R. Hamede

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Ecology· 2 Evolutionary Biology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:chromatin & epigenetic regulation· 2 Assay:whole-genome sequencing· 2 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

M. E. Jones· 3 shared A. K. Fraik· 2 shared A. Storfer· 2 shared A. Veillet· 2 shared B. Epstein· 2 shared B. Schonfeld· 2 shared H. McCallum· 2 shared M. J. Margres· 2 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersCancer Biology

M. E. Jones

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

The spectral underpinnings of pathogen spread on animal networks

N. M. Fountain-Jones, M. Silk, R. Appaw, R. Hamede, J. Rushmore, K. VanderWaal, M. E. M. Craft, S. Carver, M. Charleston

The paper uses spectral graph theory and machine learning to predict pathogen spread in animal networks and shows spectral features can predict vulnerability to infection.

bioRxiv · Jul 28, 2022 · PreprintEcology

The evolution of two transmissible cancers in Tasmanian devils

M. R. Stammnitz, K. Gori, Y. M. Kwon, E. Harry, F. J. Martin, K. Billis, Y. Cheng, A. Baez-Ortega, W. Chow, S. Comte, H. Eggertsson, S. Fox, R. Hamede, M. E. Jones, B. Lazenby, , E. P. Murchison

This study analyzes the genetic diversity and evolution of two transmissible cancers in Tasmanian devils, revealing their emergence dates, mutation rates, and evolutionary patterns.

bioRxiv · May 27, 2022Cancer Biology

Cathelicidin-3 associated with serum extracellular vesicles enables early diagnosis of a transmissible cancer

C. Espejo, R. Wilson, R. J. Pye, J. C. Ratcliffe, M. Ruiz-Aravena, E. Willms, B. W. Wolfe, R. Hamede, A. F. Hill, M. E. Jones, G. M. Woods, A. B. Lyons

The paper identifies cathelicidin-3 in serum extracellular vesicles as a biomarker for early diagnosis of DFTD in Tasmanian devils with high sensitivity and specificity.

bioRxiv · Dec 6, 2021Cancer Biology

Disruption of metapopulation structure effectively reduces Tasmanian devil facial tumour disease spread at the expense of abundance and genetic diversity

R. Durrant, R. Hamede, K. Wells, M. Lurgi

This study uses a metapopulation model to show that isolating local populations reduces Tasmanian devil facial tumour disease spread but harms genetic diversity and population size.

bioRxiv · Oct 4, 2021Ecology

Contemporary and historical selection in Tasmanian devils (Sarcophilus harrisii) support novel, polygenic response to transmissible cancer

A. R. Stahlke, B. Epstein, S. Barbosa, M. J. Margres, A. Patton, S. A. Hendricks, A. Veillet, A. K. Fraik, B. Schonfeld, H. McCallum, R. Hamede, M. E. Jones, A. Storfer, P. A. Hohenlohe

This study identifies contemporary and historical selection in Tasmanian devils in response to transmissible cancer, finding limited overlap between genes under recent and ancient selection.

bioRxiv · Aug 7, 2020 · PreprintEvolutionary Biology

Disease swamps molecular signatures of genetic-environmental associations to abiotic factors in Tasmanian devil (Sarcophilus harrisii) populations

A. K. Fraik, M. J. Margres, B. Epstein, S. Barbosa, M. Jones, S. Hendricks, B. Schonfeld, A. Stahlke, A. Veillet, R. Hamede, H. McCallum, E. Lopez-Contreras, S. J. Kallinen, P. A. Hohenlohe, J. L. Kelley, A. Storfer

The paper examines how disease impacts genetic-environmental associations in Tasmanian devils, finding that disease swamps abiotic environmental signals.

bioRxiv · Sep 24, 2019Evolutionary Biology