P. Adhikari

Bond strength between receptor binding domain of spike protein and human angiotensin converting enzyme-2 using machine learning.

This study predicts bond strength between SARS-CoV-2 spike protein RBD and ACE2 using machine learning, achieving high accuracy matching ab initio calculations for wild-type and Omicron variants.

Diversification of an emerging bacterial plant pathogen; insights from the global spread of Xanthomonas euvesicatoria pv. perforans

This study analyzes the global genetic diversity and evolution of Xanthomonas euvesicatoria pv. perforans, revealing population structure and effector gene variation linked to its spread as a tomato pathogen.

Impact of BA.1, BA.2, and BA.4/BA.5 Omicron Mutations on Therapeutic Monoclonal Antibodies

This study uses molecular dynamics simulations to assess how Omicron subvariant mutations affect binding to therapeutic monoclonal antibodies, finding significant loss of activity for most mAbs.

Effect of Delta and Omicron mutations on the RBD-SD1 do-main of the Spike protein in SARS-CoV-2 and the Omicron mutations on RBD-ACE2 interface complex

This study uses DFT-based computational analysis to examine how Delta and Omicron mutations affect the RBD-SD1 domain and RBD-ACE2 interface of SARS-CoV-2, revealing structural and interaction changes linked to increased infectivity.

Atomic-scale Quantum Chemical Calculation of Omicron Mutations Near Cleavage Sites of the Spike Protein

This study uses quantum chemical calculations to analyze Omicron mutations near SARS-CoV-2 cleavage sites, identifying structural and electronic changes that may affect viral function.

Binding Interactions between RBD of Spike-Protein and Human ACE2 in Omicron variant

This study uses molecular dynamics simulations to analyze how mutations in the Omicron variant's spike protein RBD affect ACE2 binding, showing increased efficiency and tighter binding due to electrostatic interactions.

Mutations of Omicron variant at the interface of the receptor domain motif and human angiotensin-converting enzyme-2

This study uses computational modeling to analyze Omicron variant mutations at the spike protein-ACE2 interface, showing structural and charge changes that enhance binding strength.

Delta variant with P681R critical mutation revealed by ultra-large atomic-scale ab initio simulation: Implications for the fundamentals of biomolecular interactions

The paper uses ab initio simulations to analyze the P681R and D614G mutations in the SARS-CoV-2 spike protein, showing they reduce atomic bonding cohesion and increase flexibility, potentially aiding in predicting future mutations.

Balancing growth amidst salinity stress-lifestyle perspectives from the extremophyte model Schrenkiella parvula

This study identifies key traits enabling Schrenkiella parvula to maintain growth and reproductive success under salt stress.

Genetic variation associated with PPO-inhibiting herbicide tolerance in sorghum

This study identifies genetic variants associated with tolerance to PPO-inhibiting herbicides in sorghum and suggests a metabolism-based resistance mechanism.