Author

P. H. Culviner

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:differential expression· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:variant calling· 1

Frequent Co-Authors

M. T. Laub· 2 shared C. Bei· 1 shared C. K. Guegler· 1 shared E. J. Rubin· 1 shared I. Nocedal· 1 shared J. Zhu· 1 shared Q. Gao· 1 shared Q. Liu· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersMicrobiology

M. T. Laub

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Author profile →

3 papers

Recent·Most cited

Genetically encoded transcriptional plasticity underlies stress adaptation in Mycobacterium tuberculosis

C. Bei, J. Zhu, P. H. Culviner, E. J. Rubin, S. M. Fortune, Q. Gao, Q. Liu

This study examines transcriptional plasticity in Mycobacterium tuberculosis across diverse environmental conditions and identifies genetic factors influencing it.

bioRxiv · Aug 20, 2023Microbiology

Global analysis of the specificities and targets of endoribonucleases from E. coli toxin-antitoxin systems

P. H. Culviner, I. Nocedal, S. Fortune, M. T. Laub

The paper characterizes the targets and specificities of 9 endoribonuclease toxins from E. coli using a new RNA-seq pipeline, revealing they cleave mRNAs but not tRNAs or rRNAs and disrupt ribosome biogenesis.

bioRxiv · Jul 8, 2021Microbiology

A simple, cost-effective, and robust method for rRNA depletion in RNA-sequencing studies

P. H. Culviner, C. K. Guegler, M. T. Laub

This paper develops a cost-effective method for rRNA depletion in RNA-seq by designing biotinylated oligonucleotides, achieving 75-80% mRNA reads and comparable results to the discontinued Ribo-Zero kit.

bioRxiv · Jan 6, 2020Microbiology