Author

P. J. Vonk

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1 Organism:mouse· 1

Frequent Co-Authors

R. A. Ohm· 4 shared H. A. B. Wosten· 2 shared L. G. Lugones· 2 shared A. Carver· 1 shared A. Csernetics· 1 shared A. Lipzen· 1 shared A. Tritt· 1 shared B. Balint· 1 shared

Activity by Year

2019-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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4 shared papersMicrobiology

R. A. Ohm

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Author profile →

4 papers

Recent·Most cited

The regulatory network of the White Collar complex during early mushroom development in Schizophyllum commune

P. J. Vonk, M. J. P. Van der Poel, Z. E. Niemeijer, R. A. Ohm

This study investigates the regulatory network of the White Collar complex in Schizophyllum commune during early mushroom development, showing light-dependent promoter binding and transcriptional activation.

bioRxiv · Feb 13, 2024 · PreprintMicrobiology

Lessons on fruiting body morphogenesis from genomes and transcriptomes of Agaricomycetes

L. G. Nagy, P. J. Vonk, M. Kunzler, C. Foldi, M. Viragh, R. A. Ohm, F. Hennicke, B. Balint, A. Csernetics, B. Hegedus, Z. Hou, X.-b. Liu, S. Nan, M. Pareek, N. Sahu, , Z. Merenyi

This paper identifies 921 conserved genes involved in fruiting body morphogenesis across Agaricomycetes fungi and proposes functional hypotheses for many of them.

bioRxiv · Dec 9, 2021Evolutionary Biology

The transcription factor Roc1 is a regulator of cellulose degradation in the wood-decaying mushroom Schizophyllum commune

I. M. Marian, P. J. Vonk, I. D. Valdes, K. Barry, B. Bostock, A. Carver, C. Daum, H. Lerner, A. Lipzen, H. Park, M. B. P. Schuller, M. Tegelaar, A. Tritt, J. Schmutz, J. Grimwood, , R. A. Ohm

This study identifies Roc1 as a key transcription factor regulating cellulose degradation in the wood-decaying fungus Schizophyllum commune through genomic and transcriptomic analyses.

bioRxiv · Jun 8, 2021 · PreprintMicrobiology

High-throughput targeted gene deletion in the model mushroom Schizophyllum commune using pre-assembled Cas9 ribonucleoproteins

P. J. Vonk, N. Escobar, H. A. B. Wosten, L. G. Lugones, R. A. Ohm

This paper describes a method for efficient gene deletion in Schizophyllum commune using pre-assembled Cas9 RNPs, showing that 250 bp homology arms are sufficient for homologous recombination.

bioRxiv · Feb 28, 2019Microbiology