Author

Peter K Rogan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:variant effect prediction· 2 Assay:whole-exome sequencing· 2 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Eliseos J Mucaki· 3 shared Ruipeng Lu· 3 shared Joan H.M. Knoll· 2 shared Natasha G Caminsky· 2 shared Alain Laederach· 1 shared Ami M Perri· 1 shared Ami M. Perri· 1 shared Farrah N Flegal· 1 shared

Activity by Year

2016-2016 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersGenetics

Eliseos J Mucaki

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Author profile →

4 papers

Recent·Most cited

A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer

Eliseos J Mucaki, Natasha G Caminsky, Ami M Perri, Ruipeng Lu, Alain Laederach, Matthew Halvorsen, Joan H.M. Knoll, Peter K Rogan

The paper presents a unified framework to prioritize non-coding variants of uncertain significance in heritable breast and ovarian cancer using information theory and functional analysis.

BMC Medical Genomics · Apr 11, 2016Peer-reviewedGenetics

Discovery of Primary, Cofactor, and Novel Transcription Factor Binding Site Motifs by Recursive, Thresholded Entropy Minimization

Ruipeng Lu, Eliseos J Mucaki, Peter K Rogan

The paper introduces a motif discovery method using recursive, thresholded entropy minimization to identify TF binding sites, cofactors, and novel motifs from ChIP-seq data.

bioRxiv · Mar 9, 2016Bioinformatics

Prioritizing variants in complete Hereditary Breast and Ovarian Cancer (HBOC) genes in patients lacking known BRCA mutations

Natasha G Caminsky, Eliseos J Mucaki, Ami M. Perri, Ruipeng Lu, Joan H.M. Knoll, Peter K Rogan

The paper identifies and prioritizes non-coding variants in HBOC genes for patients without known BRCA mutations using information theory to assess functional impact.

bioRxiv · Feb 9, 2016Genetics

Automated Discrimination of Dicentric and Monocentric Chromosomes by Machine Learning-based Image Processing

Yanxin Li, Joan HM Knoll, Ruth Wilkins, Farrah N Flegal, Peter K Rogan

The paper develops a machine learning-based method to automatically detect dicentric chromosomes from metaphase images, achieving acceptable accuracy across radiation doses.

bioRxiv · Jan 20, 2016Genetics