Author

Petr Novak

Biology Centre, Czech Academy of Sciences, Ceske Budejovice, Czech Republic

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Jir̆ı́ MacasiD· 2 shared Alexandros BousiosiD· 1 shared André MarquesiD· 1 shared Chenxi ZhouiD· 1 shared Estela Pérez-RomániD· 1 shared Felipe Karam TeixeiraiD· 1 shared Giulio FormentiiD· 1 shared Ian R. HendersoniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Jir̆ı́ MacasORCID

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Author profile →

2 papers

Recent·Most cited

TideCluster: clustering and classification of tandem repeats for comparative and pangenomic analysis

Petr Novak, Jiri Macas

TideCluster is a pipeline for clustering and classifying tandem repeats across genomes, demonstrated on Arabidopsis and Solanum species.

bioRxiv · Nov 9, 2026 · PreprintBioinformatics

An atlas of eukaryotic centromere architecture reveals recurrent evolutionary dynamics

Piotr Włodzimierz, Estela Pérez-Román, Jacob Gonzalez Isa, Michael Hong, Meng Zhang, Ludmila Oliveira, Katharine M. Jenike, Robin Burns, Pío Sierra, Matthias Heuberger, Chenxi Zhou, Sagarika Koppera, Mia Becker, Nicola Gorringe, Petr Novak, , Ian R. Henderson

Across 325 Darwin Tree of Life genomes, satellite-array and transposon-cluster centromeres are phylogenetically scattered, fitting a model of repeated interconversion; satellites share higher-order repeat structure but not sequence.

bioRxiv · Sep 23, 2026 · PreprintGenomics✦ In-depth digest