Author

R. A. Moreira

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 4 Biochemistry· 1

Signature Assays, Organisms & Methods

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Research Focus:protein folding & dynamics· 4 Approach:statistical model· 4 Assay:protein structure· 3 Approach:deep learning· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Approach:experimental assay· 1 Assay:proteomics· 1

Frequent Co-Authors

A. B. Poma· 3 shared F. A. N. Santos· 2 shared A. C. Borges-Araujo· 1 shared A. Dujmovic· 1 shared B. Yang· 1 shared C. Brasnett· 1 shared E. Amorim· 1 shared F. Grunewald· 1 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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3 shared papersBiophysics

A. B. Poma

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Author profile →

5 papers

Recent·Most cited

GoMartini 3: From large conformational changes in proteins to environmental bias corrections

P. C. T. Souza, L. P. Borges Araujo, C. Brasnett, R. A. Moreira, F. Grunewald, P. Park, L. Wang, H. Razmazma, A. C. Borges-Araujo, L. F. Cofas-Vargas, L. Monticelli, R. Mera-Adasme, M. N. Melo, S. Wu, S. J. Marrink, , S. Thallmair

This paper introduces an enhanced G[o]Martini model that improves protein dynamics simulation and addresses inaccuracies in the Martini protein model through diverse case studies.

bioRxiv · Apr 15, 2024Biophysics

Discovering Secondary Protein Structures via Local Euler Curvature

R. A. Moreira, R. Braddell, F. A. N. Santos, T. Fulop, M. Desroches, I. Ubarretxena-Belandia, S. Rodrigues

This paper introduces a topological fingerprint using Local Euler Curvature to identify secondary protein structures, achieving accurate classification through unsupervised clustering and supervised learning.

bioRxiv · Nov 27, 2023 · PreprintBiochemistry

The Euler Characteristic and Topological Phase Transitions in Complex Systems

E. Amorim, R. A. Moreira, F. A. N. Santos

This paper explores topological phase transitions in complex systems using algebraic topology, showing their presence in protein interaction and gene co-expression networks.

bioRxiv · Jun 30, 2021Biophysics

Optimizing mechanostable anchor points of engineered lipocalin in complex with CTLA-4

Z. Liu, R. A. Moreira, A. Dujmovic, H. Liu, B. Yang, A. B. Poma, M. A. Nash

The paper identifies optimal anchor points on an anticalin scaffold for enhanced binding strength with CTLA-4 using AFM-SMFS and computational modeling.

bioRxiv · Mar 9, 2021 · PreprintBiophysics

Characterization of structural and energetic differences between conformations of the SARS-CoV-2 spike protein

R. A. Moreira, H. V. Guzman, S. Boopathi, J. L. Baker, A. B. Poma

The paper characterizes structural and energetic differences in SARS-CoV-2 spike protein conformations to identify potential drug targets beyond the ACE2-binding RBD.

bioRxiv · Nov 1, 2020Biophysics