Author

R. A. Petit

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4

Signature Assays, Organisms & Methods

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Organism:human· 4 Assay:whole-genome sequencing· 3 Research Focus:clustering· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Research Focus:cell type annotation· 1

Frequent Co-Authors

T. D. Read· 4 shared A. G. Moller· 2 shared V. Raghuram· 2 shared A. M. Alexander· 1 shared D. Weissman· 1 shared E. B. Bernardy· 1 shared J. B. Goldberg· 1 shared M. H. Davis· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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4 shared papersMicrobiology

T. D. Read

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Author profile →

4 papers

Recent·Most cited

Average Nucleotide Identity based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome

V. Raghuram, R. A. Petit, Z. Karol, R. Mehta, D. Weissman, T. D. Read

This study uses ANI to group S. aureus strains and identifies strain-specific genes in the pangenome by analyzing gene distribution patterns.

bioRxiv · Jan 29, 2024 · PreprintMicrobiology

Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in Staphylococcus aureus strains

A. G. Moller, R. A. Petit, M. H. Davis, T. D. Read

The paper develops a nanopore sequencing method to detect VISA-causing mutations in S. aureus by amplifying and sequencing 16 genes associated with resistance.

bioRxiv · Jul 31, 2022Microbiology

Species-scale genomic analysis of S. aureus genes influencing phage host range and their relationships to virulence and antibiotic resistance genes

A. G. Moller, R. A. Petit, T. D. Read

The paper analyzes S. aureus genomes to identify phage resistance genes and their evolutionary patterns, finding that superinfection immunity genes best predict phage resistance and horizontal gene transfer.

bioRxiv · Aug 23, 2021Microbiology

Genotypic and phenotypic diversity of Staphylococcus aureus from cystic fibrosis lung infections and their interactions with Pseudomonas aeruginosa

E. B. Bernardy, R. A. Petit, V. Raghuram, A. M. Alexander, T. D. Read, J. B. Goldberg

This study analyzes the genotypic and phenotypic diversity of Staphylococcus aureus from cystic fibrosis lung infections and their interactions with Pseudomonas aeruginosa, finding that isolates retain virulence factors and exhibit varied survival responses to P. aeruginosa.

bioRxiv · Oct 22, 2019 · PreprintMicrobiology