Author

R. R. da Fonseca

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 2 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Organism:chicken / avian· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Research Focus:genome assembly· 1

Frequent Co-Authors

A. E. Pires· 1 shared A. Refoyo-Martinez· 1 shared C. Ginja· 1 shared E. Arnason· 1 shared E. Jorsboe· 1 shared E. Krogh· 1 shared F. Ekelund· 1 shared F. Racimo· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperEvolutionary Biology

A. E. Pires

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Author profile →

3 papers

Recent·Most cited

Fertilizer and cultivar affect the barley rhizobiome, while domestication age only affects growth at low nutrient levels

N. L. Kindtler, S. Sheikh, J. Richardy, E. Krogh, L. Maccario, M. Vestergard, R. R. da Fonseca, F. Ekelund, K. H. Laursen

The paper compares old and modern barley cultivars under different fertilizer regimes, finding older cultivars perform better at low nutrients but microbiome diversity depends on cultivar and fertilizer.

bioRxiv · Nov 24, 2023 · PreprintPlant Biology

Identifying loci under positive selection in complex population histories

A. Refoyo-Martinez, R. R. da Fonseca, K. Halldorsdottir, E. Arnason, T. Mailund, F. Racimo

This paper introduces a method to detect positive selection in complex population histories using admixture graphs and applies it to bovine, codfish, and human data to identify adaptive loci.

bioRxiv · Nov 16, 2018Evolutionary Biology

Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle

R. R. da Fonseca, I. Urena, S. Afonso, A. E. Pires, E. Jorsboe, L. Chikhi, C. Ginja

The paper sequenced genomes of Iberian cattle breeds to study genomic diversity and differentiation, finding high diversity and significant admixture from African cattle.

bioRxiv · Nov 9, 2018Evolutionary Biology