Detection of extended-spectrum beta-lactamase (ESBL) genes and plasmid replicons in Enterobacteriaceae using PlasmidSPAdes assembly of short-read sequence data
J. J. J. M. Stohr, M. F. Q. Kluytmans-van den Bergh, R. Wedema, A. W. Friedrich, J. A. J. W. Kluytmans, J. W. A. Rossen
This study evaluates PlasmidSPAdes' ability to detect ESBL genes and plasmid replicons in Enterobacteriaceae using short-read data, finding it less effective for ESBL-encoding plasmids.
bioRxiv · Dec 3, 2019Microbiology