Author

J. W. A. Rossen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:comparative / phylogenetic analysis· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

J. A. J. W. Kluytmans· 2 shared J. J. J. M. Stohr· 2 shared M. F. Q. Kluytmans-van den Bergh· 2 shared A. Evers· 1 shared A. W. Friedrich· 1 shared F. A. G. Reubsaet· 1 shared M. A. M. D. Kooistra-Smid· 1 shared M. J. C. van den Beld· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersMicrobiology

J. A. J. W. Kluytmans

Mutual co-authors in cluster

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintMar 4, 2021

Matrix-Assisted Laser Desorption-Ionization Time-of-Flight mass spectrometry using a custom-made database, biomarker assignment, or mathematical classifiers does not differentiate Shigella spp. and Escherichia coli

M. J. C. van den Beld, J. W. A. Rossen, A. Evers…·F. A. G. Reubsaet

This study evaluates methods to distinguish Shigella spp. and E. coli using MALDI-TOF MS, finding none effectively differentiate them due to their close relation.

DOI 10.1101/714295

proteomicsmachine learning (classical)

𝕏 PostBluesky

MicrobiologybioRxivPreprintNov 1, 2020

Genetic diversity of blaKPC-gene-containing IncF plasmids from epidemiologically related and unrelated Enterobacteriaceae

J. J. J. M. Stohr, M. F. Q. Kluytmans-van den Bergh, V. A. T. C. Weterings…·J. A. J. W. Kluytmans

This study evaluates three methods to distinguish epidemiologically related from unrelated blaKPC-containing IncF plasmids using genetic similarity metrics.

DOI 10.1101/2020.11.01.362400

whole-genome sequencingstatistical model

𝕏 PostBluesky

MicrobiologybioRxivDec 3, 2019

Detection of extended-spectrum beta-lactamase (ESBL) genes and plasmid replicons in Enterobacteriaceae using PlasmidSPAdes assembly of short-read sequence data

J. J. J. M. Stohr, M. F. Q. Kluytmans-van den Bergh, R. Wedema…·J. W. A. Rossen

This study evaluates PlasmidSPAdes' ability to detect ESBL genes and plasmid replicons in Enterobacteriaceae using short-read data, finding it less effective for ESBL-encoding plasmids.

DOI 10.1099/mgen.0.000400

humanbulk RNA-seq

𝕏 PostBluesky