Author

Raghu Ramesh

University of Wisconsin–Madison

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Organism:mouse· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

John P. SvareniD· 3 shared Daifeng WangiD· 2 shared Saniya KhullariD· 2 shared Seongsik Won· 2 shared Alena J. Hanson· 1 shared Camila Lopez‐AnidoiD· 1 shared Eugene J. Wyatt· 1 shared Ki Hwan MaiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersNeuroscience

John P. SvarenORCID

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Author profile →

3 papers

Recent·Most cited

Integration of Nuclear Receptors into a Schwann cell Gene Regulatory Network

Raghu Ramesh, Saniya Khullar, Alena J. Hanson, Seongsik Won, Camila Lopez‐Anido, Daifeng Wang, John P. Svaren

This study identifies a NR2F-regulated gene network in Schwann cells, revealing enrichment for nonmyelinating Schwann cell genes and novel transcription factor interactions.

bioRxiv · Oct 30, 2025 · PreprintNeuroscience

NetREm: Network Regression Embeddings reveal cell-type transcription factor coordination for gene regulation

Saniya Khullar, Xiang Huang, Raghu Ramesh, John P. Svaren, Daifeng Wang

NetREm identifies cell-type-specific transcription factor coordination for gene regulation using single-cell data and validates findings with functional genomics.

Bioinformatics Advances · Dec 18, 2024Peer-reviewedBioinformatics

JUN Regulation of Injury-induced Enhancers in Schwann Cells

Raghu Ramesh, Yanti Manurung, Ki Hwan Ma, Todd Blakely, Seongsik Won, Oscar Andrés Moreno-Ramos, Eugene J. Wyatt, Rajeshwar B. Awatramani, John P. Svaren

This study investigates whether injury-induced enhancers in Schwann cells are pre-programmed or activated de novo, and identifies JUN's role in regulating these enhancers to drive repair gene expression.

Journal of Neuroscience · Jul 29, 2022Peer-reviewedNeuroscience