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Rebecca Chen

University of California, San Francisco

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Biology Disciplines

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Bioinformatics· 1

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1

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A.D. Choudhury· 1 shared Ahmad SalehiiD· 1 shared Alan Gi-Lun ChengiD· 1 shared Ali Reza Rais Sadati· 1 shared Amber Casillas· 1 shared Andres Gottfried‐BlackmoreiD· 1 shared Angela Oliveira PiscoiD· 1 shared Annie Jensen· 1 shared

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A.D. Choudhury

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Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedOct 28, 2025

Benchmarking Cell Type and Gene Set Annotation by Large Language Models with AnnDictionary

George Crowley, Robert C. Jones, Mark A. Krasnow…·David Seong

The paper benchmarks large language models for cell-type and gene set annotation using AnnDictionary, finding high accuracy in cell-type annotation and strong functional gene set recovery.

11 citations

bulk RNA-seqmachine learning (classical)