KegAlign: Optimizing pairwise alignments with diagonal partitioning
Ahmed Burak Gulhan, Richard C. Burhans, Robert Harris, Mahmut Kandemir, Maximilian Haeussler, Anton Nekrutenko
KegAlign improves pairwise genome alignment speed using GPU acceleration and diagonal partitioning, achieving 150x faster alignment than lastZ for human/mouse genomes.
Genome biology · Nov 17, 2025Peer-reviewedGenomics