Author

Mahmut Kandemir

Pennsylvania State UniversityORCID 0000-0002-9940-9951Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Organism:human· 1 Organism:mouse· 1 Research Focus:software / tool· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Ahmed Burak Gulhan· 1 shared Anton NekrutenkoiD· 1 shared Maximilian HaeussleriD· 1 shared Richard C. Burhans· 1 shared Robert Harris· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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1 shared paperGenomics

Ahmed Burak Gulhan

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1 paper

Recent·Most cited

GenomicsGenome biologyPeer-reviewedNov 17, 2025

KegAlign: Optimizing pairwise alignments with diagonal partitioning

Ahmed Burak Gulhan, Richard C. Burhans, Robert Harris…·Anton Nekrutenko

KegAlign improves pairwise genome alignment speed using GPU acceleration and diagonal partitioning, achieving 150x faster alignment than lastZ for human/mouse genomes.

3 citations

humanmouse

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