Robert Kofler

Suitability of different mapping algorithms for genome-wide polymorphism scans with Pool-Seq data

This study evaluates mapping algorithms for Pool-Seq data, finding that some tools produce false positives and recommending using multiple tools to improve reliability.

PoPoolationTE2: comparative population genomics of transposable elements using Pool-Seq

PoPoolationTE2 enables unbiased comparison of transposable element abundance across pooled population samples using Pool-Seq data.

Massive bursts of transposable element activity in Drosophila

The paper analyzes transposable element activity in Drosophila species by comparing TE insertion frequencies across populations, finding recent bursts in both species with different TE family dominance.

The P-element strikes again: the recent invasion of natural Drosophila simulans populations

The paper shows that the P-element, previously thought absent from Drosophila simulans, has recently invaded its populations via horizontal transfer from D. melanogaster.

Low levels of transposable element activity in Drosophila mauritiana: causes and consequences

This study compares transposable element activity between Drosophila species, finding lower activity in D. mauritiana due to ecological factors rather than selection.