Author

Runzhi Xie

Xidian University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Approach:graph neural network· 1 Organism:human· 1

Frequent Co-Authors

Yuxuan HuiD· 2 shared Han XuiD· 1 shared Jacqueline J PengiD· 1 shared Jiadong LiniD· 1 shared Jiazhen RongiD· 1 shared Junping LiiD· 1 shared Kai TaniD· 1 shared Lin GaoiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Yuxuan HuORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Atlas-scale single-cell analysis beyond in-memory paradigm with scAtlasPy

Han Xu, Yangzhan Ye, Senpeng Zhang, Runzhi Xie, Junping Li, Jiadong Lin, Yuxuan Hu, Lin Gao

scAtlasPy enables efficient analysis of large single-cell atlases by using disk-resident computing, achieving high speed and low memory usage compared to existing tools.

bioRxiv · Sep 8, 2026 · PreprintBioinformatics

Learning predictive models of tissue cellular neighborhoods from cell phenotypes with graph pooling

Yuxuan Hu, Jiazhen Rong, Runzhi Xie, Yafei Xu, Jacqueline J Peng, Lin Gao, Kai Tan

CytoCommunity identifies tissue cellular neighborhoods from spatial data using graph neural networks, revealing condition-specific patterns in cancer tissues.

bioRxiv · Nov 6, 2022 · PreprintBioinformatics