Author

Yafei Xu

Xidian UniversityORCID 0000-0003-4168-0244Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 2 Research Focus:clustering· 2 Approach:graph neural network· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Research Focus:benchmarking· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Jacqueline J PengiD· 1 shared Jiazhen RongiD· 1 shared Kai TaniD· 1 shared Lin GaoiD· 1 shared Lin GaoiD· 1 shared Runzhi Xie· 1 shared Yuxuan HuiD· 1 shared Yuxuan HuiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 18 mutual co-author links

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1 shared paperBioinformatics

Jacqueline J PengORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 27, 2025

HRCHY-CytoCommunity identifies hierarchical tissue organization in cell-type spatial maps

Zekun Wang, Yafei Xu, Yuxuan Hu, Lin Gao

HRCHY-CytoCommunity identifies hierarchical multicellular structures in spatial cell-type maps and improves patient stratification in breast cancer.

DOI 10.1101/2025.03.27.645631

humanspatial transcriptomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 6, 2022

Learning predictive models of tissue cellular neighborhoods from cell phenotypes with graph pooling

Yuxuan Hu, Jiazhen Rong, Runzhi Xie…·Kai Tan

CytoCommunity identifies tissue cellular neighborhoods from spatial data using graph neural networks, revealing condition-specific patterns in cancer tissues.

5 citations

humanspatial transcriptomics

𝕏 PostBluesky