Author

S. Bagby

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:genome assembly· 1 Assay:long-read sequencing· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

A. Preston· 2 shared A. P. Catalano· 1 shared A. R. Gorringe· 1 shared B. Bready· 1 shared H. Olsen· 1 shared I. MacArthur· 1 shared J. Abrahams· 1 shared J. M. Sage· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersMicrobiology

A. Preston

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2 papers

Recent·Most cited

Duplications drive diversity in Bordetella pertussis on an underestimated scale.

J. S. Abrahams, M. R. Weigand, N. A. Ring, I. MacArthur, S. Peng, M. M. Williams, B. Bready, A. P. Catalano, J. R. Davis, M. D. Kaiser, J. Oliver, J. M. Sage, S. Bagby, M. L. Tondella, A. R. Gorringe, A. Preston

This study identifies widespread tandem duplications in B. pertussis genomes using read depth analysis, revealing 272 putative duplications across 11 hotspots and highlighting genome instability.

bioRxiv · Feb 6, 2020 · PreprintMicrobiology

Resolving the complex Bordetella pertussis genome using barcoded nanopore sequencing

N. Ring, J. Abrahams, M. Jain, H. Olsen, A. Preston, S. Bagby

This paper demonstrates the use of barcoded nanopore sequencing and optimized assembly pipelines to resolve complex Bordetella pertussis genomes, revealing inter-strain genomic rearrangements and challenges with highly duplicated regions.

bioRxiv · Aug 3, 2018Microbiology