Author

S. Gharbia

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Approach:biophysical modeling· 1 Organism:E. coli· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1

Frequent Co-Authors

A. Painset· 1 shared C. Collins· 1 shared C. Jenkins· 1 shared C. R. Barker· 1 shared D. Greig· 1 shared D. Pickard· 1 shared D. R. Greig· 1 shared L. Larkin· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperMicrobiology

A. Painset

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Presence of phage-plasmids in multiple serovars of Salmonella enterica

S. Nair, C. R. Barker, M. Bird, D. R. Greig, C. Collins, A. Painset, M. Chattaway, D. Pickard, L. Larkin, S. Gharbia, X. Didelot, P. Ribeca

This study identifies phage-plasmids in multiple Salmonella serovars, showing their prevalence and serovar-specific distribution, with implications for antimicrobial resistance transmission.

bioRxiv · Feb 2, 2024 · PreprintMicrobiology

Comparison of single nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga Toxin Producing Escherichia coli.

T. Dallman, C. Jenkins, S. Gharbia, D. Greig

The paper compares single nucleotide variants identified by Illumina and Oxford Nanopore sequencing in STEC O157:H7 isolates, finding discrepancies mainly due to methylation and suggesting both technologies can be used interchangeably for typing.

bioRxiv · Mar 6, 2019Microbiology