Author

S. L. Neff

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

C. S. Greene· 2 shared D. A. Hogan· 2 shared G. Doing· 2 shared A. J. Lee· 1 shared B. A. Stanton· 1 shared J. D. Holt· 1 shared T. E. Reiter· 1 shared T. H. Hampton· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 22 mutual co-author links

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2 shared papersMicrobiology

C. S. Greene

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Analysis of Pseudomonas aeruginosa transcription in an ex vivo cystic fibrosis sputum model identifies metal restriction as a gene expression stimulus

S. L. Neff, G. Doing, T. E. Reiter, T. H. Hampton, C. S. Greene, D. A. Hogan

The paper analyzes Pseudomonas aeruginosa gene expression in CF sputum and identifies metal restriction as a key driver of gene expression variation across donors.

bioRxiv · Aug 21, 2023 · PreprintMicrobiology

Computationally efficient assembly of a Pseudomonas aeruginosa gene expression compendium

G. Doing, A. J. Lee, S. L. Neff, J. D. Holt, B. A. Stanton, C. S. Greene, D. A. Hogan

The paper processes and normalizes thousands of Pseudomonas aeruginosa RNA-seq datasets to enable cross-experiment comparisons and hypothesis testing.

bioRxiv · Jan 24, 2022 · PreprintMicrobiology