Author

S. M. d. Oliveira

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Organism:E. coli· 1 Research Focus:phylogenetics / evolution· 1 Organism:plant (other)· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

A. Hakkinen· 1 shared A. J. Helmstetter· 1 shared A. R. Zuntini· 1 shared A. S. Ribeiro· 1 shared E. J. d. Lirio· 1 shared F. Forest· 1 shared H. Sauquet· 1 shared I. Larridon· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBiophysics

A. Hakkinen

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2 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintJan 9, 2024

Towards a phylogenomic classification of Magnoliidae

A. J. Helmstetter, Z. Ezedin, E. J. d. Lirio…·H. Sauquet

This study presents a comprehensive phylogenomic analysis of Magnoliidae, updating its classification by resolving previously ambiguous relationships and recognizing 21 families.

DOI 10.1101/2024.01.09.574948

plant (other)DNA methylation

𝕏 PostBluesky

BiophysicsJournal of The Royal Society InterfacePeer-reviewedDec 11, 2019

Transcription closed and open complex formation coordinate expression of genes with a shared promoter region

A. Hakkinen, S. M. D. Oliveira, R. Neeli-Venkata, A. S. Ribeiro

The paper models gene-pair transcription dynamics in E. coli, showing that co-expression requires compatible rate-limiting steps, validated by single-cell RNA measurements.

DOI 10.1098/rsif.2019.0507

E. coliscRNA-seq

𝕏 PostBluesky