Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
4 papers
Recent·Most cited
Pranav V Rao, D. Sommer, D. Davidson…·F. A. Dreyer
This paper introduces Cadense, a machine learning framework that generates antibody conformational ensembles from sequence, capturing dynamic properties and improving docking accuracy.
D. Akpinaroglu, J. A. Ruffolo, S. P. Mahajan, J. J. Gray
This paper introduces DeepSCAb, a deep learning method that improves antibody structure prediction by modeling side chain conformations, outperforming existing methods that lack side chain context.
S. P. Mahajan, Y. Srinivasan, J. W. Labonte…·J. J. Gray
This study identifies sequence and structural motifs that determine peptide substrate specificity for GalNAc-T2, revealing key residues and conformations that influence glycosylation efficiency.
J. A. Ruffolo, C. Guerra, S. P. Mahajan…·J. J. Gray
DeepH3 improves CDR H3 loop structure prediction by learning geometric potentials from antibody sequences, outperforming standard Rosetta energy functions in benchmark tests.