Author

S. Ruybal-Pesantez

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:chromatin & epigenetic regulation· 2 Assay:DNA methylation· 2 Research Focus:cell type annotation· 1 Organism:human· 1 Organism:mouse· 1 Organism:plant (other)· 1 Organism:virus· 1

Frequent Co-Authors

K. Day· 3 shared K. E. Tiedje· 2 shared M. Pascual· 2 shared Q. He· 2 shared S. Pilosof· 2 shared E. B. Baskerville· 1 shared G. Tonkin-Hill· 1 shared H. Shim· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersEcology

K. Day

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Evolutionary BiologybioRxivNov 18, 2020

A scalable method for identifying recombinants from unaligned sequences

Q. Feng, K. Tiedje, S. Ruybal-Pesantez…·Y.-b. Chan

This paper introduces a scalable method to identify recombinant sequences from unaligned data, demonstrating its effectiveness on malaria parasite var genes.

DOI 10.1093/bioinformatics/btac012

plant (other)statistical model

𝕏 PostBluesky

EcologyPLOS BiologyPeer-reviewedJun 24, 2019

Competition for hosts modulates vast antigenic diversity to generate persistent strain structure in Plasmodium falciparum

S. Pilosof, Q. He, K. E. Tiedje…·M. Pascual

The paper shows immune selection generates persistent genetic modules in Plasmodium falciparum, which function as dynamic strains in host immune space.

DOI 10.1371/journal.pbio.3000336

humanmouse

𝕏 PostBluesky

EcologybioRxivApr 10, 2018

Networks of genetic similarity reveal non-neutral processes shape strain structure in Plasmodium falciparum

Q. He, S. Pilosof, K. E. Tiedje…·M. Pascual

The paper develops neutral models to analyze genetic structure in Plasmodium falciparum and finds non-neutral strain organization in a Ghanaian population.

DOI 10.1038/s41467-018-04219-3

virusDNA methylation

𝕏 PostBluesky