Author

G. Tonkin-Hill

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Evolutionary Biology· 2

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Research Focus:chromatin & epigenetic regulation· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Organism:bacteria (other)· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1

Frequent Co-Authors

A. K. Pontinen· 2 shared J. Corander· 2 shared R. A. Gladstone· 2 shared S. Arredondo-Alonso· 2 shared S. D. Bentley· 2 shared A. C. Steer· 1 shared A. J. Hayes· 1 shared A. P. Pandurangan· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersMicrobiology

A. K. Pontinen

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Plasmid-driven strategies for clone success in Escherichia coli

S. Arredondo-Alonso, A. K. Pontinen, J. Gama, R. A. Gladstone, K. Harms, G. Tonkin-Hill, H. A. Thorpe, G. S. Simonsen, O. Samuelsen, P. J. Johnsen, J. Corander

The paper uses long-read sequencing to analyze plasmids and chromosomes in E. coli over two decades, revealing long-term plasmid-lineage associations and success strategies.

bioRxiv · Oct 14, 2023 · PreprintMicrobiology

Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis

O. Xie, J. M. Morris, A. J. Hayes, R. J. Towers, M. G. Jespersen, J. A. Lees, N. L. Ben Zakour, O. Berking, S. L. Baines, G. P. Carter, G. Tonkin-Hill, L. Schrieber, L. McIntyre, J. L. Lacey, T. B. James, , M. R. Davies

The paper shows extensive genomic overlap between Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis, including shared genes and recombination events, with implications for vaccine development.

bioRxiv · Aug 10, 2023Microbiology

Mutational spectra analysis reveals bacterial niche and transmission routes

C. Ruis, A. Weimann, G. Tonkin-Hill, A. P. Pandurangan, M. MATUSZEWSKA, G. G. R. Murray, R. C. Levesque, T. L. Blundell, R. A. Floto, J. Parkhill

The paper analyzes mutational spectra in bacterial lineages to infer niche-specific mutagen exposure and transmission routes.

bioRxiv · Jul 13, 2022 · PreprintMicrobiology

Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe

G. Tonkin-Hill, R. A. Gladstone, A. K. Pontinen, S. Arredondo-Alonso, S. D. Bentley, J. Corander

The paper introduces Panstripe, a method to robustly analyze gene gain and loss rates in prokaryotic pangenomes, accounting for sampling bias and annotation errors.

bioRxiv · Apr 23, 2022Evolutionary Biology

A scalable method for identifying recombinants from unaligned sequences

Q. Feng, K. Tiedje, S. Ruybal-Pesantez, G. Tonkin-Hill, M. Duffy, K. Day, H. Shim, Y.-b. Chan

This paper introduces a scalable method to identify recombinant sequences from unaligned data, demonstrating its effectiveness on malaria parasite var genes.

bioRxiv · Nov 18, 2020Evolutionary Biology