Author

S. W. Singer

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4 Bioengineering· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:proteomics· 3 Research Focus:cell type annotation· 2 Assay:metagenomics· 2 Organism:plant (other)· 2 Organism:bacteria (other)· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1

Frequent Co-Authors

B. A. Simmons· 3 shared A. Eudes· 2 shared A. Mukhopadhyay· 2 shared H. Scheller· 2 shared Y. Chen· 2 shared A. Feist· 1 shared A. Fleissner· 1 shared A. I. Flamholz· 1 shared

Activity by Year

2018-2022 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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3 shared papersMicrobiology

B. A. Simmons

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Revealing Pentose Catabolism in Pseudomonas putida

M.-R. Park, R. Gauttam, B. Fong, Y. Chen, H. G. Lim, A. Feist, A. Mukhopadhyay, C. J. Petzold, B. A. Simmons, S. W. Singer

The paper identifies three Pseudomonas putida isolates with diverse pentose catabolism capabilities and characterizes their genes and pathways for xylose and arabinose oxidation.

bioRxiv · Oct 5, 2022 · PreprintMicrobiology

Trajectories for the evolution of bacterial CO2-concentrating mechanisms

A. I. Flamholz, E. J. Dugan, J. Panich, J. J. Desmarais, L. M. Oltrogge, W. W. Fischer, S. W. Singer, D. F. Savage

This paper studies the evolution of bacterial CO2-concentrating mechanisms by engineering E. coli to express ancestral forms of these systems and testing their growth under varying CO2 concentrations.

bioRxiv · Jun 21, 2022Microbiology

Assessing Comparative Microbiome Performance in Plant Cell Wall Deconstruction Using Multi-omics-Informed Network Analysis

L. M. Tom, M. Aulitto, Y.-W. Wu, Y. W. Gao, K. Deng, N. Xiao, B. G. Rodriguez, C. Louime, T. R. Northen, A. Eudes, J. Mortimer, P. D. Adams, H. Scheller, B. A. Simmons, J. Ceja-Navarro, S. W. Singer

The paper assesses microbiome performance in plant cell wall deconstruction using network analysis and identifies key microbial populations and enzymes involved.

bioRxiv · Jan 7, 2022 · PreprintMicrobiology

Development of genetic tools for the thermophilic filamentous fungus Thermoascus aurantiacus

R. Gabriel, J. Prinz, M. Jecmenica, C. Romero-Vazquez, P. Chou, S. Harth, L. Floerl, L. Curran, A. Oostlander, L. Matz, S. Fritsche, J. Gorman, T. Schuerg, A. Fleissner, S. W. Singer

This study develops genetic tools for Thermoascus aurantiacus, including a transformation system, CRISPR/Cas9 gene editing, and sexual crossing protocol, to enhance enzyme production.

bioRxiv · Jun 9, 2020Microbiology

Methyl ketone production by Pseudomonas putida is enhanced by plant-derived amino acids

J. Dong, Y. Chen, V. T. Benites, E. Baidoo, C. Petzold, H. Beller, A. Eudes, H. Scheller, P. Adams, A. Mukhopadhyay, B. A. Simmons, S. W. Singer

This study enhances methyl ketone production in Pseudomonas putida using plant-derived amino acids from hydrolysates, achieving a 9-fold increase in titer.

bioRxiv · Dec 13, 2018Bioengineering