Author

Sathvik Kolli

University of California, Berkeley

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Approach:optimal transport· 1

Frequent Co-Authors

Aniketh Janardhan ReddyiD· 2 shared Aviral Kumar· 2 shared Michael H. HerschliD· 2 shared Nilah M. IoannidisiD· 2 shared Patrick D. HsuiD· 2 shared Sergey LevineiD· 2 shared Xinyang GengiD· 2 shared Amy X. LuiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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2 shared papersSynthetic Biology

Aniketh Janardhan ReddyORCID

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2 papers

Recent·Most cited

Designing Cell-Type-Specific Promoter Sequences Using Conservative Model-Based Optimization

Aniketh Janardhan Reddy, Xinyang Geng, Michael H. Herschl, Sathvik Kolli, Aviral Kumar, Patrick D. Hsu, Sergey Levine, Nilah M. Ioannidis

The paper introduces a framework for designing cell-type-specific promoters using model-based optimization, demonstrating improved specificity in blood cancer cell lines.

neural information processing systems · Jan 1, 2024Peer-reviewedSynthetic Biology

Strategies for effectively modelling promoter-driven gene expression using transfer learning

Aniketh Janardhan Reddy, Michael H. Herschl, Xinyang Geng, Sathvik Kolli, Amy X. Lu, Aviral Kumar, Patrick D. Hsu, Sergey Levine, Nilah M. Ioannidis

This paper develops transfer learning strategies to model promoter-driven gene expression in understudied cell types, showing improvements in performance with pretraining and transfer.

bioRxiv · Feb 24, 2023 · PreprintGenomics