Author

Saurabh Kalikar

Intel (India)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:long-read sequencing· 2 Research Focus:benchmarking· 1 Assay:DNA methylation· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Organism:plant (other)· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Sanchit MisraiD· 2 shared Vasimuddin MdiD· 2 shared Chirag JainiD· 1 shared Darryl Ho· 1 shared Heng LiiD· 1 shared Jialin DingiD· 1 shared Nesime TatbuliD· 1 shared Tim KraskaiD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 23 mutual co-author links

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2 shared papersGenomics

Sanchit MisraORCID

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2 papers

Recent·Most cited

Accelerating long-read analysis on modern CPUs

Saurabh Kalikar, Chirag Jain, Vasimuddin Md, Sanchit Misra

The paper optimizes minimap2 for faster long-read mapping on CPUs, achieving up to 1.8x speedup without changing output.

bioRxiv · Jul 21, 2021 · PreprintGenomics

LISA: A Case For Learned Index based Acceleration of Biological Sequence Analysis

Darryl Ho, Saurabh Kalikar, Sanchit Misra, Jialin Ding, Vasimuddin Md, Nesime Tatbul, Heng Li, Tim Kraska

The paper introduces LISA, a machine learning-based index for accelerating sequence search in genomics, showing performance improvements over traditional indexes in various case studies.

bioRxiv · Dec 22, 2020 · PreprintBioinformatics