Author

Shaolong Lin

Macao Polytechnic University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Assay:protein sequence· 2 Approach:benchmark study· 1 Research Focus:gene regulatory network inference· 1 Research Focus:protein design· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Silong ZhaiiD· 3 shared Tiantao Liu· 3 shared Huanxiang LiuiD· 2 shared Shirley W. I. SiuiD· 2 shared Xinke ZhaniD· 2 shared Bingwen ZhuiD· 1 shared Dejun JiangiD· 1 shared Huifeng ZhaoiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersBioinformatics

Silong ZhaiORCID

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Author profile →

3 papers

Recent·Most cited

MAERM: Predicting Enzyme-Reaction Matching Relationships with a Mixed-Attention Model

Tiantao Liu, Silong Zhai, Shaolong Lin, Xinke Zhan, Junwen Deng, Huanxiang Liu, Shirley W. I. Siu

MAERM predicts enzyme-reaction matching relationships using a mixed-attention model, outperforming baselines and enabling enzyme design.

bioRxiv · Jul 10, 2026 · PreprintBioinformatics

Protein-peptide Interaction Representation Learning with Pretrained Language Models

Xinke Zhan, Silong Zhai, Tiantao Liu, Shaolong Lin, Tao Bi, Bingwen Zhu, Shirley W. I. Siu

PepInter is a deep learning framework that uses pre-trained language models to predict protein-peptide interactions and bioactivity, outperforming existing methods on benchmark datasets.

bioRxiv · Jan 13, 2026 · PreprintBioinformatics

PepPCBench is a Comprehensive Benchmark for Protein-Peptide Complex Structure Prediction with AlphaFold3

Silong Zhai, Huifeng Zhao, Jike Wang, Shaolong Lin, Tiantao Liu, Dejun Jiang, Huanxiang Liu, Yu Kang, Xiaojun Yao, Tingjun Hou

The paper introduces PepPCBench, a benchmark framework to evaluate AlphaFold3's performance in predicting protein-peptide complexes using a curated dataset.

bioRxiv · Apr 8, 2025 · PreprintBioinformatics