Dejun Jiang

PepPCBench is a Comprehensive Benchmark for Protein-Peptide Complex Structure Prediction with AlphaFold3

The paper introduces PepPCBench, a benchmark framework to evaluate AlphaFold3's performance in predicting protein-peptide complexes using a curated dataset.

PPFlow: Target-aware Peptide Design with Torsional Flow Matching

PPFlow designs target-aware peptides using torsional flow matching, achieving state-of-the-art performance in peptide drug generation and optimization.