PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF
Genevieve Stein-O’Brien, Jacob Carey, Wai Shing Lee, Michael Considine, Alexander V. Favorov, Emily L. Flam, Theresa W. Guo, Sijia Li, Luigi Marchionni, Thomas D. Sherman, Shawn Sivy, Daria A. Gaykalova, Ronald D.G. McKay, Michael F. Ochs, Carlo Colantuoni, Elana Judith Fertig
The paper introduces PatternMarkers and GWCoGAPS to identify data-driven biomarkers from whole-genome data using NMF, demonstrating their application on GTex data.
Bioinformatics · Jan 30, 2017Peer-reviewedBioinformatics