Author
Johns Hopkins UniversityORCID 0000-0001-5037-0147Unclaimed ORCID profile · follow to get notified of new preprints
6 papers
Recent·Most cited
Rossin Erbe, Michael D. Kessler, Alexander V. Favorov…·Elana Judith Fertig
This study integrates multiple scATAC-seq datasets using matrix factorization and transfer learning to identify common regulatory patterns across datasets.
Thomas D. Sherman, Luciane Tsukamoto Kagohara, Raymon Cao…·Elana Judith Fertig
CancerInSilico simulates bulk and single-cell gene expression data from mathematical models to enable benchmarking of time course analysis methods with known ground truth.
Genevieve Stein-O’Brien, Luciane Tsukamoto Kagohara, Sijia Li…·Elana Judith Fertig
The paper uses integrated time course omics analysis to distinguish immediate therapeutic response from acquired resistance in head and neck cancer.
Bahman Afsari, Theresa W. Guo, Michael Considine…·Elana Judith Fertig
SEVA identifies differential heterogeneity in gene isoform usage between cancer subtypes using RNA-seq data.
Farhoud Faraji, Munfarid A Zaidi, Carole Fakhry, Daria A. Gaykalova
This review explores the molecular mechanisms of HPV-related carcinogenesis in head and neck cancer, focusing on dysregulated pathways and genome-wide changes in HPV-positive oropharyngeal squamous cell carcinoma.
Genevieve Stein-O’Brien, Jacob Carey, Wai Shing Lee…·Elana Judith Fertig
The paper introduces PatternMarkers and GWCoGAPS to identify data-driven biomarkers from whole-genome data using NMF, demonstrating their application on GTex data.