Author

Shayoni Ray

NGM Biopharmaceuticals (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Amanda Saravia-ButleriD· 2 shared Homer W. FogleiD· 2 shared Jonathan M. GalazkaiD· 2 shared Sigrid S. ReinschiD· 2 shared Sylvain V. CostesiD· 2 shared Afshin BeheshtiiD· 1 shared Alicia VillacampaiD· 1 shared Candice Ginn T. TahimiciD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Amanda Saravia-ButlerORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

NASA GeneLab RNA-Seq Consensus Pipeline: Standardized Processing of Short-Read RNA-Seq Data

Eliah G. Overbey, Amanda Saravia-Butler, Zhe Zhang, Komal S. Rathi, Homer W. Fogle, Willian A. da Silveira, Richard John Barker, Joseph J. Bass, Afshin Beheshti, Daniel C. Berrios, Elizabeth A. Blaber, Egle Cekanaviciute, Helio A. Costa, Laurence B Davin, Kathleen M Fisch, , Jonathan M. Galazka

The paper describes a standardized RNA-Seq pipeline for spaceflight data, enabling reproducible analysis of gene expression changes in astronauts and organisms exposed to spaceflight.

iScience · Mar 26, 2021Peer-reviewedBioinformatics

RNAseq analysis of rodent spaceflight experiments is confounded by sample collection techniques

San-Huei Lai Polo, Amanda Saravia-Butler, Valery Boyko, Marie T. Dinh, Yi‐Chun Chen, Homer W. Fogle, Sigrid S. Reinsch, Shayoni Ray, Kaushik Chakravarty, Oana Marcu, Rick B. Chen, Sylvain V. Costes, Jonathan M. Galazka

The paper shows that RNAseq analysis of rodent spaceflight experiments is confounded by sample collection and preservation techniques, with preservation effects overshadowing spaceflight effects.

iScience · Jan 1, 2020Peer-reviewedSystems Biology