Author

Shikun Feng

Beijing Academy of Artificial Intelligence

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:drug response / drug discovery· 2 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Approach:contrastive learning· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:diffusion model· 1

Frequent Co-Authors

Haiguang LiuiD· 3 shared Tao Qin· 3 shared Qiuyi LiiD· 2 shared Yiheng ZhuiD· 2 shared Zhenghang Shi· 2 shared Anton Lozhkov· 1 shared Chang‐Yu HsiehiD· 1 shared Diego di BernardoiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersGenomics

Haiguang LiuORCID

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Author profile →

3 papers

Recent·Most cited

Carbon-A: Unified Genome Annotation across Eukaryotic Diversity

Georgia Channing, Zhenghang Shi, Xiaoxing Zhang, Mathieu Morlon, Kashif Rasul, Anton Lozhkov, Shikun Feng, J Li, Haiguang Liu, Diego di Bernardo, Nieng Yan, Tao Qin, Thomas Wolf, Leandro von Werra, Qiuyi Li

Carbon-A annotates protein-coding genes across eukaryotic genomes using a large encoder model, achieving high accuracy and enabling the creation of a comprehensive annotation database.

bioRxiv · Oct 21, 2026 · PreprintGenomics

GENERator-v2: Reconciling Coarse Tokenization with Single-Nucleotide Resolution in Genomic Language Modeling

Qiuyi Li, Zhihao Zhan, Shikun Feng, Yiheng Zhu, Yuan He, Wei Wu, Zhenghang Shi, Shengjie Wang, Zongyong Hu, Zhao Yang, Jiaoyang Li, Jian Tang, Haiguang Liu, Tao Qin

This paper introduces improved genomic language models that balance long-range context with single-nucleotide resolution, achieving better performance and efficiency than prior methods.

bioRxiv · May 4, 2026 · PreprintGenomics

Ophiuchus-Ab: A Versatile Generative Foundation Model for Advanced Antibody-Based Immunotherapy

Yiheng Zhu, Jian Ma, Mingze Yin, Jialu Wu, Lin Tang, Zhiyun Zhang, Qiuyi Li, Shikun Feng, Haiguang Liu, Tao Qin, Junchi Yan, Chang‐Yu Hsieh, Tingjun Hou

Ophiuchus-Ab is a generative foundation model for antibody design that captures inter-chain dependencies and predicts antibody properties like developability and binding affinity.

bioRxiv · Feb 4, 2026 · PreprintBioinformatics