Author

Shoshana Marcus

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:genome assembly· 3 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Organism:human· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Hayan Lee· 3 shared James Gurtowski· 2 shared Michael Schatz· 2 shared W. Richard McCombie· 2 shared Maria Nattestad· 1 shared Michael C. Schatz· 1 shared Sara Goodwin· 1 shared Shinjae Yoo· 1 shared

Activity by Year

2014-2016 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 28 mutual co-author links

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3 shared papersBioinformatics

Hayan Lee

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3 papers

Recent·Most cited

Third-generation sequencing and the future of genomics

Hayan Lee, James Gurtowski, Shinjae Yoo, Maria Nattestad, Shoshana Marcus, Sara Goodwin, W. Richard McCombie, Michael C. Schatz

This paper discusses third-generation sequencing technologies and their potential to improve genome assembly, structural variation analysis, and haplotype phasing.

bioRxiv · Apr 13, 2016 · PreprintBioinformatics

Error correction and assembly complexity of single molecule sequencing reads.

Hayan Lee, James Gurtowski, Shinjae Yoo, Shoshana Marcus, W. Richard McCombie, Michael Schatz

This paper evaluates the impact of long-read sequencing on genome assembly across multiple species and introduces a new error correction algorithm and predictive model.

bioRxiv · Jun 18, 2014 · PreprintBioinformatics

SplitMEM: Graphical pan-genome analysis with suffix skips

Shoshana Marcus, Hayan Lee, Michael Schatz

SplitMEM constructs compressed de Bruijn graphs for pan-genomes efficiently, revealing core genome properties in Bacillus anthracis and Escherichia coli strains.

bioRxiv · Apr 6, 2014Bioinformatics