Third-generation sequencing and the future of genomics
Hayan Lee, James Gurtowski, Shinjae Yoo, Maria Nattestad, Shoshana Marcus, Sara Goodwin, W. Richard McCombie, Michael C. Schatz
Abstract
Third-generation long-range DNA sequencing and mapping technologies are creating a renaissance in high-quality genome sequencing. Unlike second-generation sequencing, which produces short reads a few hundred base-pairs long, third-generation single-molecule technologies generate over 10,000 bp reads or map over 100,000 bp molecules. We analyze how increased read lengths can be used to address longstanding problems in de novo genome assembly, structural variation analysis and haplotype phasing.
02 /Specification & Classification
Click any tag to browse matching papers- Assay
- Research Focus
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Ultra-low input single tube linked-read library method enables short-read NGS systems to generate highly accurate and economical long-range sequencing information for de novo genome assembly and haplotype phasing
Zhoutao Chen, Long Pham, … Ming Lei·Genome ResearchPeer-reviewed·Jun 1, 2020
- Haplotype And Repeat Separation In Long Reads
German Tischler·bioRxiv·Jun 2, 2017
- Efficient whole genome haplotyping and high-throughput single molecule phasing with barcode-linked reads
David Redin, Tobias Frick, … Afshin Ahmadian·Scientific ReportsPeer-reviewed·Dec 2, 2019
- Hapo-G, Haplotype-Aware Polishing Of Genome Assemblies
Jean‐Marc Aury, Benjamin Istace·NAR Genomics and BioinformaticsPeer-reviewed·Apr 9, 2021
- New algorithms for accurate and efficient de-novo genome assembly from long DNA sequencing reads
Laura Natalia González-García, David Guevara-Barrientos, … Jorge Duitama·Life Science AlliancePeer-reviewed·Feb 22, 2023
- Critical length in long read resequencing
Wouter De Coster, Mojca Stražišar, Peter De Rijk·bioRxiv·Apr 29, 2019