Author

Shriramprasad Venkatesan

University at Buffalo, State University of New York

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Rudiyanto GunawaniD· 3 shared Panagiotis ChrysinasiD· 2 shared Sriram NeelameghamiD· 2 shared Vishnu Ghosh· 2 shared Changyou CheniD· 1 shared Edward Sobczak· 1 shared Isaac Ang· 1 shared Priya Ghanshyambhai Patel· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersBioinformatics

Rudiyanto GunawanORCID

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3 papers

Recent·Most cited

SCREAM: Single-cell Clustering using Representation Autoencoder of Multiomics

Panagiotis Chrysinas, Shriramprasad Venkatesan, Priya Ghanshyambhai Patel, Rudiyanto Gunawan

SCREAM is a deep learning framework for integrating and clustering multi-omics single-cell data, showing superior performance in benchmarking with high ARI and NMI scores.

bioRxiv · Oct 3, 2025 · PreprintBioinformatics

GlycoEnzDB: A database of enzymes involved in human glycosylation

Yusen Zhou, Vishnu Ghosh, Shriramprasad Venkatesan, Shyam Sriram, Edward Sobczak, Srirangaraj Setlur, Rudiyanto Gunawan, Sriram Neelamegham

GlycoEnzDB curates and presents human glycoenzyme data, linking enzyme functions, pathways, and expression data with external resources and AI-generated descriptions.

bioRxiv · Aug 30, 2025 · PreprintBiochemistry

Cell and tissue-specific glycosylation pathways informed by single-cell transcriptomics

Panagiotis Chrysinas, Shriramprasad Venkatesan, Isaac Ang, Vishnu Ghosh, Changyou Chen, Sriram Neelamegham, Rudiyanto Gunawan

The paper analyzes single-cell glycogene expression in human tissues to identify cell- and tissue-specific glycosylation pathways and transcription factor regulation.

NAR Genomics and Bioinformatics · Sep 28, 2024Peer-reviewedBioinformatics