Author

Shyam Sriram

University at Buffalo, State University of New York

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Assay:metagenomics· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Rudiyanto GunawaniD· 2 shared Sriram NeelameghamiD· 2 shared Arun Kumar SinghiD· 1 shared Changyou CheniD· 1 shared Edward Sobczak· 1 shared Ejas Althaf Abtheen· 1 shared Shriramprasad Venkatesan· 1 shared Srirangaraj SetluriD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBiochemistry

Rudiyanto GunawanORCID

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2 papers

Recent·Most cited

GlycoEnzDB: A database of enzymes involved in human glycosylation

Yusen Zhou, Vishnu Ghosh, Shriramprasad Venkatesan, Shyam Sriram, Edward Sobczak, Srirangaraj Setlur, Rudiyanto Gunawan, Sriram Neelamegham

GlycoEnzDB curates and presents human glycoenzyme data, linking enzyme functions, pathways, and expression data with external resources and AI-generated descriptions.

bioRxiv · Aug 30, 2025 · PreprintBiochemistry

Transformer-based Deep Learning for Glycan Structure Inference from Tandem Mass Spectrometry

Ejas Althaf Abtheen, Arun Kumar Singh, Shyam Sriram, Changyou Chen, Sriram Neelamegham, Rudiyanto Gunawan

This paper introduces GlycoBERT and GlycoBART, transformer-based models for glycan structure prediction from MS/MS data, achieving high accuracy and enabling de novo structure inference.

bioRxiv · Jul 2, 2025 · PreprintBioinformatics